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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890609.1_cds_XP_016445355.1_40323
CDS Infomation

[gene=LOC107770546] [db_xref=GeneID:107770546] [protein=two pore calcium channel protein 1A] [partial=5'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016445355.1] [location=complement(join(32868..32955,33050..33081,33770..33850,35521..35607,37613..37703,37927..37991,38348..38516,39108..39171,40172..40279,42245..42302,43326..43469,43546..43611,45342..45414,46956..47017,48205..48282,48433..48538,48850..49016,49208..49268,50891..>51015))] [gbkey=CDS]
Sequence

GTCATTTTGCTGTTAATCTTGGTCGCAGATATTGTGGTCTACATTCTCTTTCTAGCAGAC
TTCTATTATCTACCATTCCGTATTGCACCCTATCTCCGTGTGGTGTTCTTTATTTTGAAC
ATTAGGGAATTACGAGATAGCTTCTTCATCCTTGCAGGAATGCTTGGTACCTACCTTAAT
GTTGTGGCTCTATCTGCTTTATTTCTTCTGTTCTCGAGCTGGTTAGCATACGTCTTCTTT
GAAGACACGCGTCAGGGGAAGACAACGTTTACTTCGTACGGCACCACGTTGTACCAAATG
TTTGTCTTATTCACAACATCAAACAATCCAGATGTCTGGATTCCTGCGTACAAGGACTCA
CGTTGGTACTGCTTGTTTTTTGTTCTGTACGTGCTATTGGGCGTTTACTTTGTTACCAAC
TTAATTCTTGCTGTTGTATATGATAGCTTCAAAAGTGAGCTTGTAAAACAAGTGGCTGAT
AAAGATCGTTTGAGGCTAAGGACTTTGAAGAAAGCATTTAGCTTGATTGATGAAGCTAAC
AATGGGCACCTCAACGAGAAGCAATGTACCCTTCTGTTTGAGGAACTTAACAAATACAGG
ACATTGCCGAAAATATCAGGAGATGATTTTAAGTCAATATTCAGTGAGCTGGATGATACT
GGTGACTTTAAGATAAATTTGGATGAATTTGCTGATCTGTGCACTGCCATTGGACTAAGA
TTTCAGAAAGAAGATTCACTGCCAATCTTTGAAGCATGTCCAAATTTCTATCATTCACCA
GCATCAGAGAAGTTGAGAGGCTTCGTCCGTGGAGCTACGTTTGAGTACATAATAGTGTTC
GTTCTCCTTGTCAATCTTGTTGCTGTTATTATTGAAACTACGCTTGATATACAGAACAAC
TCAGGTCAAACCTTTTGGCAGAAGGTGGAGTTCACCTTTGGCTGGCTGTATGTTATTGAG
ATGGCACTAAAAGTGTATACTTACGGTTTTGAGAACTATTGGAGGGATGGTCAAAATCGA
TTTGATTTTGTCGTCACTTGGGTCATTGTTATTGGAGAAACAGCTACTTTTGTAGCCCCT
GATGGTCTGACTTTCTTGTCCAATGGAGAATGGATTCGCTATCTTCTTATCGCAAGAATG
TTACGATTAATAAGACTCTTGATGCACGTTGAACGCTATCGTGCTTTTGTTGCCACATTT
TTTACCCTTATACCAAGTCTGGTGCCATACTTGGGGACCATATTCTGCATCTTATGCTTT
TATTGCTCTCTTGGTTTACAGATCTTTGGGGGGATTGTCAACACTGGAAACCCCAATTTA
GCCCAAACTGATCTTGCTGGTAACGACTATTTGCTTTTTAACTTCAATGACTATCCAAAT
GGCATGGTCACACTTTTCAATATATTGGTGATGGGAAACTGGCAAGTGTGGATGCAGAGC
TACAAGGAACTAACGGGAACTGCCTGGACTTATGCCTACTTTGTCAGCTTCTATCTTATC
TCAGTTTTGTGGCTGTTAAATTTGATTGTAGCATTTGTCTTGGAAGCATTTCAAGCAGAA
GTAGATCTAGAGGCATCAGCGAGATGTGTGGATGGTGATGACAAGGAAGCAAAAAGTGAG
CGGCGACGTAATGTTGGCACTAAGACTCGGAGCCAGCGAGTAGATTTCCTCCTCCATCAC
ATGTTGAGATCTGAACTAACAGAATGCTCCAATGAGAATCCATAA

Peptide Sequence

PEP ID

XP_016445355.1
PEP Infomation

PREDICTED: two pore calcium channel protein 1A [Nicotiana tabacum]
Sequence

MEEYLLSGESSNSGRTRRRIGSIFDRRDAIAHGSAYQKAAALVDLAEDGIGLPEEILEGA
SFEKAAELYFIFTRFDFLWSLNYLALVVLNFFEKPLWCSKHLAESCNNRDYYYLGELPFL
TGAESLIFEGVTLLLLIIHILFPISYEGFNLYWRSLLNRVKVILLLILVADIVVYILFLA
DFYYLPFRIAPYLRVVFFILNIRELRDSFFILAGMLGTYLNVVALSALFLLFSSWLAYVF
FEDTRQGKTTFTSYGTTLYQMFVLFTTSNNPDVWIPAYKDSRWYCLFFVLYVLLGVYFVT
NLILAVVYDSFKSELVKQVADKDRLRLRTLKKAFSLIDEANNGHLNEKQCTLLFEELNKY
RTLPKISGDDFKSIFSELDDTGDFKINLDEFADLCTAIGLRFQKEDSLPIFEACPNFYHS
PASEKLRGFVRGATFEYIIVFVLLVNLVAVIIETTLDIQNNSGQTFWQKVEFTFGWLYVI
EMALKVYTYGFENYWRDGQNRFDFVVTWVIVIGETATFVAPDGLTFLSNGEWIRYLLIAR
MLRLIRLLMHVERYRAFVATFFTLIPSLVPYLGTIFCILCFYCSLGLQIFGGIVNTGNPN
LAQTDLAGNDYLLFNFNDYPNGMVTLFNILVMGNWQVWMQSYKELTGTAWTYAYFVSFYL
ISVLWLLNLIVAFVLEAFQAEVDLEASARCVDGDDKEAKSERRRNVGTKTRSQRVDFLLH
HMLRSELTECSNENP

Transcript Sequence

Gene sequence data has not been registered.